Mobile application for Reference Guided Sequence Alignment
Mobile application for Reference Guided Sequence Alignment using Oxford Nanopore Technology Data
Overview
f5n can run the following on ARM devices,
1. [minimap2] https://github.com/lh3/minimap2 sequence alignment
2. [samtools] https://github.com/samtools/samtools sort
3. [samtools] https://github.com/samtools/samtools index
4. [f5c] https://github.com/hasindu2008/f5c index
5. [f5c] https://github.com/hasindu2008/f5c call-methylation
6. [f5c] https://github.com/hasindu2008/f5c event alignment
We build a standalone application and a cluster of nodes where a master orchestrates the other nodes. In this way, ONT data can be corrected for errors in the field, on the fly!
You can find out more from https://github.com/SanojPunchihewa/f5n